There are lots of functions that modify a diagnostic. This can be via a
`&mut Diagnostic` or a `&mut DiagnosticBuilder`, because the latter type
wraps the former and impls `DerefMut`.
This commit converts all the `&mut Diagnostic` occurrences to `&mut
DiagnosticBuilder`. This is a step towards greatly simplifying
`Diagnostic`. Some of the relevant function are made generic, because
they deal with both errors and warnings. No function bodies are changed,
because all the modifier methods are available on both `Diagnostic` and
`DiagnosticBuilder`.
